com.dumontierlab.pdb2rdf.parser
Class ContentHandlerState

java.lang.Object
  com.dumontierlab.pdb2rdf.parser.ContentHandlerState

All Implemented Interfaces:

org.xml.sax.ContentHandler

Direct Known Subclasses:

AtomSiteCategoryHandler, CellCategoryHandler, ChemCompCategory, CitationAuthorCategoryHandler, CitationCategoryHandler, DataBlockHandler, EntityCategoryHandler, EntityPolyCategoryHandler, EntitySourceGeneticallyManipulatedHandler, EntitySourceNaturalCategoryHandler, ExptlCategoryHandler, NmrEnsembleCategoryHandler, NmrRefineCategoryHandler, PdbXmlContentHandler, RefineCategoryHandler, RnaPdbXmlContentHandler, StructCategoryHandler, StructConfigCategoryHandler, StructNucleicAcidBasePairCategoryHandler

public class ContentHandlerState
extends java.lang.Object
implements org.xml.sax.ContentHandler

Author:

Alexander De Leon

Field Summary

protected java.lang.StringBuilder

buffer

Constructor Summary

ContentHandlerState(PdbRdfModel rdfModel, UriBuilder uriBuilder)

Method Summary

void	characters(char[] ch, int start, int length)
protected void	clear()
protected com.hp.hpl.jena.rdf.model.RDFNode	createDecimalLiteral(java.lang.String value)
protected com.hp.hpl.jena.rdf.model.RDFNode	createLiteral(java.lang.String value, java.lang.String xsdType)
protected com.hp.hpl.jena.rdf.model.Resource	createResource(UriPattern pattern, java.lang.String... params)
void	endDocument()
void	endElement(java.lang.String uri, java.lang.String localName, java.lang.String name)
void	endPrefixMapping(java.lang.String prefix)
void	error(org.xml.sax.SAXParseException e)
void	fatalError(org.xml.sax.SAXParseException e)
protected java.lang.String	getBufferContent()
protected PdbRdfModel	getRdfModel()
protected UriBuilder	getUriBuilder()
void	ignorableWhitespace(char[] ch, int start, int length)
protected boolean	isBuffering()
protected boolean	isNil(org.xml.sax.Attributes attributes)
void	notationDecl(java.lang.String name, java.lang.String publicId, java.lang.String systemId)
void	processingInstruction(java.lang.String target, java.lang.String data)
org.xml.sax.InputSource	resolveEntity(java.lang.String publicId, java.lang.String systemId)
void	setDocumentLocator(org.xml.sax.Locator locator)
protected void	setState(ContentHandlerState state)
void	skippedEntity(java.lang.String name)
protected void	startBuffering()
void	startDocument()
void	startElement(java.lang.String uri, java.lang.String localName, java.lang.String name, org.xml.sax.Attributes attributes)
void	startPrefixMapping(java.lang.String prefix, java.lang.String uri)
protected void	stopBuffering()
void	unparsedEntityDecl(java.lang.String name, java.lang.String publicId, java.lang.String systemId, java.lang.String notationName)
void	warning(org.xml.sax.SAXParseException e)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

buffer

protected java.lang.StringBuilder buffer

Constructor Detail

ContentHandlerState

public ContentHandlerState(PdbRdfModel rdfModel,
                           UriBuilder uriBuilder)

Method Detail

characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws org.xml.sax.SAXException

Specified by:

characters in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

endDocument

public void endDocument()
                 throws org.xml.sax.SAXException

Specified by:

endDocument in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

endElement

public void endElement(java.lang.String uri,
                       java.lang.String localName,
                       java.lang.String name)
                throws org.xml.sax.SAXException

Specified by:

endElement in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

endPrefixMapping

public void endPrefixMapping(java.lang.String prefix)
                      throws org.xml.sax.SAXException

Specified by:

endPrefixMapping in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

error

public void error(org.xml.sax.SAXParseException e)
           throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

fatalError

public void fatalError(org.xml.sax.SAXParseException e)
                throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

ignorableWhitespace

public void ignorableWhitespace(char[] ch,
                                int start,
                                int length)
                         throws org.xml.sax.SAXException

Specified by:

ignorableWhitespace in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

notationDecl

public void notationDecl(java.lang.String name,
                         java.lang.String publicId,
                         java.lang.String systemId)
                  throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

processingInstruction

public void processingInstruction(java.lang.String target,
                                  java.lang.String data)
                           throws org.xml.sax.SAXException

Specified by:

processingInstruction in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

resolveEntity

public org.xml.sax.InputSource resolveEntity(java.lang.String publicId,
                                             java.lang.String systemId)
                                      throws java.io.IOException,
                                             org.xml.sax.SAXException

Throws:

java.io.IOException

org.xml.sax.SAXException

setDocumentLocator

public void setDocumentLocator(org.xml.sax.Locator locator)

Specified by:

setDocumentLocator in interface org.xml.sax.ContentHandler

skippedEntity

public void skippedEntity(java.lang.String name)
                   throws org.xml.sax.SAXException

Specified by:

skippedEntity in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

startDocument

public void startDocument()
                   throws org.xml.sax.SAXException

Specified by:

startDocument in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

startElement

public void startElement(java.lang.String uri,
                         java.lang.String localName,
                         java.lang.String name,
                         org.xml.sax.Attributes attributes)
                  throws org.xml.sax.SAXException

Specified by:

startElement in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

startPrefixMapping

public void startPrefixMapping(java.lang.String prefix,
                               java.lang.String uri)
                        throws org.xml.sax.SAXException

Specified by:

startPrefixMapping in interface org.xml.sax.ContentHandler

Throws:

org.xml.sax.SAXException

unparsedEntityDecl

public void unparsedEntityDecl(java.lang.String name,
                               java.lang.String publicId,
                               java.lang.String systemId,
                               java.lang.String notationName)
                        throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

warning

public void warning(org.xml.sax.SAXParseException e)
             throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

setState

protected void setState(ContentHandlerState state)

getRdfModel

protected PdbRdfModel getRdfModel()

getUriBuilder

protected UriBuilder getUriBuilder()

startBuffering

protected void startBuffering()

stopBuffering

protected void stopBuffering()

isBuffering

protected boolean isBuffering()

isNil

protected boolean isNil(org.xml.sax.Attributes attributes)

createResource

protected com.hp.hpl.jena.rdf.model.Resource createResource(UriPattern pattern,
                                                            java.lang.String... params)

getBufferContent

protected java.lang.String getBufferContent()

clear

protected void clear()

createLiteral

protected com.hp.hpl.jena.rdf.model.RDFNode createLiteral(java.lang.String value,
                                                          java.lang.String xsdType)

createDecimalLiteral

protected com.hp.hpl.jena.rdf.model.RDFNode createDecimalLiteral(java.lang.String value)