com.dumontierlab.pdb2rdf.parser
Class AbstractPdbXmlParser

java.lang.Object
  com.dumontierlab.pdb2rdf.parser.AbstractPdbXmlParser

Direct Known Subclasses:

PdbXmlParser, RnaPdbXmlParser

public abstract class AbstractPdbXmlParser
extends java.lang.Object

Author:

Alexander De Leon

Constructor Summary

AbstractPdbXmlParser()

Method Summary

protected abstract ContentHandlerState	getContentHandler(PdbRdfModel model)
PdbRdfModel	parse(org.xml.sax.InputSource input)
PdbRdfModel	parse(org.xml.sax.InputSource input, PdbRdfModel model)
PdbRdfModel	parse(java.lang.String pdbId)
PdbRdfModel	parse(java.lang.String pdbId, PdbRdfModel model)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractPdbXmlParser

public AbstractPdbXmlParser()

Method Detail

parse

public PdbRdfModel parse(java.lang.String pdbId)
                  throws java.io.IOException,
                         org.xml.sax.SAXException

Throws:

java.io.IOException

org.xml.sax.SAXException

parse

public PdbRdfModel parse(java.lang.String pdbId,
                         PdbRdfModel model)
                  throws java.io.IOException,
                         org.xml.sax.SAXException

Throws:

java.io.IOException

org.xml.sax.SAXException

parse

public PdbRdfModel parse(org.xml.sax.InputSource input)
                  throws java.io.IOException,
                         org.xml.sax.SAXException

Throws:

java.io.IOException

org.xml.sax.SAXException

parse

public PdbRdfModel parse(org.xml.sax.InputSource input,
                         PdbRdfModel model)
                  throws java.io.IOException,
                         org.xml.sax.SAXException

Throws:

java.io.IOException

org.xml.sax.SAXException

getContentHandler

protected abstract ContentHandlerState getContentHandler(PdbRdfModel model)