Uses of Class
com.dumontierlab.pdb2rdf.model.PdbRdfModel

Packages that use PdbRdfModel

com.dumontierlab.pdb2rdf.parser
com.dumontierlab.pdb2rdf.parser.rna

Uses of PdbRdfModel in com.dumontierlab.pdb2rdf.parser

Methods in com.dumontierlab.pdb2rdf.parser that return PdbRdfModel

protected PdbRdfModel	ContentHandlerState.getRdfModel()
PdbRdfModel	AbstractPdbXmlParser.parse(org.xml.sax.InputSource input)
PdbRdfModel	AbstractPdbXmlParser.parse(org.xml.sax.InputSource input, PdbRdfModel model)
PdbRdfModel	AbstractPdbXmlParser.parse(java.lang.String pdbId)
PdbRdfModel	AbstractPdbXmlParser.parse(java.lang.String pdbId, PdbRdfModel model)

Methods in com.dumontierlab.pdb2rdf.parser with parameters of type PdbRdfModel

protected ContentHandlerState	PdbXmlParser.getContentHandler(PdbRdfModel model)
protected abstract ContentHandlerState	AbstractPdbXmlParser.getContentHandler(PdbRdfModel model)
PdbRdfModel	AbstractPdbXmlParser.parse(org.xml.sax.InputSource input, PdbRdfModel model)
PdbRdfModel	AbstractPdbXmlParser.parse(java.lang.String pdbId, PdbRdfModel model)

Constructors in com.dumontierlab.pdb2rdf.parser with parameters of type PdbRdfModel

AtomSiteCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId, java.util.Map<java.lang.String,java.util.Collection<com.hp.hpl.jena.rdf.model.Resource>> residues)

CellCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

ChemCompCategory(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId, java.util.Map<java.lang.String,java.util.Collection<com.hp.hpl.jena.rdf.model.Resource>> residues)

CitationAuthorCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbid)

CitationCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

ContentHandlerState(PdbRdfModel rdfModel, UriBuilder uriBuilder)

DataBlockHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder)

EntityCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

EntityPolyCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

EntitySourceGeneticallyManipulatedHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

EntitySourceNaturalCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

ExptlCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

NmrEnsembleCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

NmrRefineCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

PdbXmlContentHandler(PdbRdfModel model)

RefineCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

StructCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

StructConfigCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)

Uses of PdbRdfModel in com.dumontierlab.pdb2rdf.parser.rna

Methods in com.dumontierlab.pdb2rdf.parser.rna with parameters of type PdbRdfModel

protected ContentHandlerState

RnaPdbXmlParser.getContentHandler(PdbRdfModel model)

Constructors in com.dumontierlab.pdb2rdf.parser.rna with parameters of type PdbRdfModel

RnaPdbXmlContentHandler(PdbRdfModel model)

StructNucleicAcidBasePairCategoryHandler(PdbRdfModel rdfModel, UriBuilder uriBuilder, java.lang.String pdbId)