gate.gui
Class CorpusQualityAssurance

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gate.creole.AbstractVisualResource
                      gate.gui.CorpusQualityAssurance

All Implemented Interfaces:

CorpusListener, Resource, FeatureBearer, NameBearer, VisualResource, ImageObserver, MenuContainer, Serializable, EventListener, Accessible

@CreoleResource(name="Corpus Quality Assurance",
                guiType=LARGE,
                resourceDisplayed="gate.Corpus",
                mainViewer=false,
                helpURL="http://gate.ac.uk/userguide/sec:eval:corpusqualityassurance")
public class CorpusQualityAssurance
extends AbstractVisualResource
implements CorpusListener

Quality assurance corpus view. Compare two sets of annotations with optionally their features globally for each annotation and for each document inside a corpus with different measures notably precision, recall and F1-score.

See Also:

Serialized Form

Nested Class Summary

protected class	CorpusQualityAssurance.CompareAction Update document table.
protected class	CorpusQualityAssurance.ExportToHtmlAction
protected static class	CorpusQualityAssurance.ExtendedListModel
protected class	CorpusQualityAssurance.HelpAction
protected class	CorpusQualityAssurance.SetBdmFileAction
protected static class	CorpusQualityAssurance.ToggleSelectionABModel Add a suffix A and B for the first and second selected item.
protected static class	CorpusQualityAssurance.ToggleSelectionModel

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

protected XJTable	annotationTable
protected DefaultTableModel	annotationTableModel
protected URL	bdmFileUrl
protected static int	CLASSIFICATION_MEASURES
protected Collator	collator
protected CorpusQualityAssurance.CompareAction	compareAction
protected XJTable	confusionTable
protected DefaultTableModel	confusionTableModel
protected Corpus	corpus
protected boolean	corpusChanged
protected ArrayList<HashMap<String,AnnotationDiffer>>	differsByDocThenType ordered by document as in the corpus then contains (annotation type * AnnotationDiffer)
protected Map<String,TreeMap<String,TreeMap<String,TreeSet<String>>>>	docsSetsTypesFeatures cache for document*set*type*feature names
protected XJTable	document2Table
protected DefaultTableModel	document2TableModel
protected ArrayList<String>	documentNames
protected XJTable	documentTable
protected DefaultTableModel	documentTableModel
protected Comparator<String>	doubleComparator
protected CorpusQualityAssurance.ExportToHtmlAction	exportToHtmlAction
protected JCheckBox	featureCheck
protected JList	featureList
protected Object[]	featuresSelected
protected static int	FSCORE_MEASURES
protected String	keySetName
protected JList	measure2List
protected JList	measureList
protected int	measuresType FSCORE_MEASURES or CLASSIFICATION_MEASURES
protected JTabbedPane	measureTabbedPane
protected gate.gui.CorpusQualityAssurance.OpenAnnotationDiffAction	openAnnotationDiffAction
protected gate.gui.CorpusQualityAssurance.OpenDocumentAction	openDocumentAction
protected JToggleButton	optionsButton
protected JProgressBar	progressBar
protected Thread	readSetsTypesFeaturesThread
protected gate.gui.CorpusQualityAssurance.ReloadCacheAction	reloadCacheAction
protected String	responseSetName
protected JCheckBox	setCheck
protected JList	setList
protected JTabbedPane	tableTabbedPane
protected Timer	timer
protected TimerTask	timerTask
protected Comparator<String>	totalComparator
protected JCheckBox	typeCheck
protected JList	typeList
protected TreeSet<String>	types
protected Object[]	typesSelected
protected OptionsMap	userConfig
protected JCheckBox	verboseOptionCheckBox

Fields inherited from class gate.creole.AbstractVisualResource

features, handle

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CorpusQualityAssurance()

Method Summary

void	cleanup() Does nothing now, but meant to clear all internal data
protected void	compareAnnotation()
protected String	createToolTipFromColumnName(String columnName) Create a table header tool tips from the column name.
void	documentAdded(CorpusEvent e) Called when a document has been added
void	documentRemoved(CorpusEvent e) Called when a document has been removed
Resource	init() Initialise this resource, and return it.
protected void	initGuiComponents()
protected void	initListeners()
protected void	initLocalData()
protected void	printSummary(Object measureObject, DefaultTableModel tableModel, int columnGroupSize, int insertionRow, Object[] measures)
protected void	readSetsTypesFeatures(int documentStart) Update set lists.
void	setTarget(Object target) Called by the GUI when this viewer/editor has to initialise itself for a specific object.
protected void	updateSetList()

Methods inherited from class gate.creole.AbstractVisualResource

getFeatures, getParameterValue, setFeatures, setHandle, setParameterValue, setParameterValues

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface gate.util.NameBearer

getName, setName

Field Detail

corpus

protected Corpus corpus

corpusChanged

protected boolean corpusChanged

types

protected TreeSet<String> types

docsSetsTypesFeatures

protected final Map<String,TreeMap<String,TreeMap<String,TreeSet<String>>>> docsSetsTypesFeatures

cache for document*set*type*feature names

differsByDocThenType

protected ArrayList<HashMap<String,AnnotationDiffer>> differsByDocThenType

ordered by document as in the corpus then contains (annotation type * AnnotationDiffer)

documentNames

protected ArrayList<String> documentNames

keySetName

protected String keySetName

responseSetName

protected String responseSetName

typesSelected

protected Object[] typesSelected

featuresSelected

protected Object[] featuresSelected

timer

protected Timer timer

timerTask

protected TimerTask timerTask

readSetsTypesFeaturesThread

protected Thread readSetsTypesFeaturesThread

measuresType

protected int measuresType

FSCORE_MEASURES or CLASSIFICATION_MEASURES

FSCORE_MEASURES

protected static final int FSCORE_MEASURES

See Also:

Constant Field Values

CLASSIFICATION_MEASURES

protected static final int CLASSIFICATION_MEASURES

See Also:

Constant Field Values

collator

protected Collator collator

doubleComparator

protected Comparator<String> doubleComparator

totalComparator

protected Comparator<String> totalComparator

userConfig

protected OptionsMap userConfig

bdmFileUrl

protected URL bdmFileUrl

documentTable

protected XJTable documentTable

documentTableModel

protected DefaultTableModel documentTableModel

annotationTable

protected XJTable annotationTable

annotationTableModel

protected DefaultTableModel annotationTableModel

document2Table

protected XJTable document2Table

document2TableModel

protected DefaultTableModel document2TableModel

confusionTable

protected XJTable confusionTable

confusionTableModel

protected DefaultTableModel confusionTableModel

tableTabbedPane

protected JTabbedPane tableTabbedPane

setList

protected JList setList

typeList

protected JList typeList

featureList

protected JList featureList

optionsButton

protected JToggleButton optionsButton

measureTabbedPane

protected JTabbedPane measureTabbedPane

measureList

protected JList measureList

measure2List

protected JList measure2List

setCheck

protected JCheckBox setCheck

typeCheck

protected JCheckBox typeCheck

featureCheck

protected JCheckBox featureCheck

progressBar

protected JProgressBar progressBar

verboseOptionCheckBox

protected JCheckBox verboseOptionCheckBox

openDocumentAction

protected gate.gui.CorpusQualityAssurance.OpenDocumentAction openDocumentAction

openAnnotationDiffAction

protected gate.gui.CorpusQualityAssurance.OpenAnnotationDiffAction openAnnotationDiffAction

exportToHtmlAction

protected CorpusQualityAssurance.ExportToHtmlAction exportToHtmlAction

reloadCacheAction

protected gate.gui.CorpusQualityAssurance.ReloadCacheAction reloadCacheAction

compareAction

protected CorpusQualityAssurance.CompareAction compareAction

Constructor Detail

CorpusQualityAssurance

public CorpusQualityAssurance()

Method Detail

init

public Resource init()

Description copied from class: AbstractVisualResource

Initialise this resource, and return it.

Specified by:

init in interface Resource

Overrides:

init in class AbstractVisualResource

initLocalData

protected void initLocalData()

initGuiComponents

protected void initGuiComponents()

initListeners

protected void initListeners()

createToolTipFromColumnName

protected String createToolTipFromColumnName(String columnName)

Create a table header tool tips from the column name.

Parameters:

columnName - name used for creating the tooltip

Returns:

tooltip value

cleanup

public void cleanup()

Description copied from class: AbstractVisualResource

Does nothing now, but meant to clear all internal data

Specified by:

cleanup in interface Resource

Overrides:

cleanup in class AbstractVisualResource

setTarget

public void setTarget(Object target)

Description copied from class: AbstractVisualResource

Called by the GUI when this viewer/editor has to initialise itself for a specific object.

Specified by:

setTarget in interface VisualResource

Overrides:

setTarget in class AbstractVisualResource

Parameters:

target - the object (be it a Resource, DataStore or whatever) this viewer has to display

documentAdded

public void documentAdded(CorpusEvent e)

Description copied from interface: CorpusListener

Called when a document has been added

Specified by:

documentAdded in interface CorpusListener

documentRemoved

public void documentRemoved(CorpusEvent e)

Description copied from interface: CorpusListener

Called when a document has been removed

Specified by:

documentRemoved in interface CorpusListener

readSetsTypesFeatures

protected void readSetsTypesFeatures(int documentStart)

Update set lists.

Parameters:

documentStart - first document to read in the corpus, the first document of the corpus is 0.

updateSetList

protected void updateSetList()

compareAnnotation

protected void compareAnnotation()

printSummary

protected void printSummary(Object measureObject,
                            DefaultTableModel tableModel,
                            int columnGroupSize,
                            int insertionRow,
                            Object[] measures)