KnowledgeBase (Pellet :: Core 2.5.1-dllearner API)

java.lang.Object
- org.mindswap.pellet.KnowledgeBase

public class KnowledgeBase
extends Object

Author:: Evren Sirin

Nested Class Summary

Nested Classes
Modifier and Type	Class and Description
`static class`	`KnowledgeBase.AssertionType`
`static class`	`KnowledgeBase.ChangeType`
`protected static class`	`KnowledgeBase.ReasoningState` The state of KB w.r.t.

Field Summary

Fields
Modifier and Type	Field and Description
`protected ABox`	`abox`
`protected MultiValueMap<KnowledgeBase.AssertionType,aterm.ATermAppl>`	`aboxAssertions`
`protected TaxonomyBuilder`	`builder`
`protected boolean`	`canUseIncConsistency`
`protected EnumSet<KnowledgeBase.ChangeType>`	`changes`
`static Logger`	`log`
`protected RBox`	`rbox`
`protected EnumSet<KnowledgeBase.ReasoningState>`	`state`
`protected TBox`	`tbox`
`Timers`	`timers` Timers used in various different parts of KB.

Constructor Summary

Constructors
Modifier Constructor and Description

KnowledgeBase()

protected KnowledgeBase(KnowledgeBase kb, boolean emptyABox)
Create a KB based on an existing one.

Constructors
Modifier	Constructor and Description
	`KnowledgeBase()`
`protected`	`KnowledgeBase(KnowledgeBase kb, boolean emptyABox)` Create a KB based on an existing one.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method and Description
`void`	`addAllDifferent(aterm.ATermList list)`
`boolean`	`addAnnotation(aterm.ATermAppl s, aterm.ATermAppl p, aterm.ATermAppl o)`
`boolean`	`addAnnotationProperty(aterm.ATerm p)`
`void`	`addAntisymmetricProperty(aterm.ATermAppl p)` Deprecated. Use `addAsymmetricProperty(ATermAppl)`
`void`	`addAsymmetricProperty(aterm.ATermAppl p)`
`void`	`addClass(aterm.ATermAppl c)`
`void`	`addComplementClass(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`void`	`addDataPropertyValue(aterm.ATermAppl p, aterm.ATermAppl s, aterm.ATermAppl o)` Deprecated. Use addPropertyValue instead
`void`	`addDatatype(aterm.ATermAppl p)`
`boolean`	`addDatatypeDefinition(aterm.ATermAppl name, aterm.ATermAppl datarange)` Adds a new datatype defined to be equivalent to the given data range expression.
`boolean`	`addDatatypeProperty(aterm.ATerm p)` Add a new object property.
`void`	`addDifferent(aterm.ATermAppl i1, aterm.ATermAppl i2)`
`void`	`addDisjointClass(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`void`	`addDisjointClasses(aterm.ATermList classes)`
`void`	`addDisjointClasses(List<aterm.ATermAppl> classes)`
`void`	`addDisjointProperties(aterm.ATermList properties)`
`void`	`addDisjointProperties(List<aterm.ATermAppl> properties)`
`void`	`addDisjointProperty(aterm.ATermAppl p1, aterm.ATermAppl p2)`
`void`	`addDisjointProperty(aterm.ATermAppl p1, aterm.ATermAppl p2, DependencySet ds)`
`void`	`addDomain(aterm.ATerm p, aterm.ATermAppl c)`
`void`	`addDomain(aterm.ATerm p, aterm.ATermAppl c, Set<aterm.ATermAppl> explain)` For internal use when domain axioms come from TBox absorption
`void`	`addEquivalentClass(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`void`	`addEquivalentProperty(aterm.ATermAppl p1, aterm.ATermAppl p2)`
`void`	`addFunctionalProperty(aterm.ATermAppl p)`
`Individual`	`addIndividual(aterm.ATermAppl i)`
`void`	`addInverseFunctionalProperty(aterm.ATerm p)`
`void`	`addInverseProperty(aterm.ATermAppl p1, aterm.ATermAppl p2)`
`void`	`addIrreflexiveProperty(aterm.ATermAppl p)`
`void`	`addKey(aterm.ATermAppl c, Set<aterm.ATermAppl> properties)`
`boolean`	`addNegatedPropertyValue(aterm.ATermAppl p, aterm.ATermAppl s, aterm.ATermAppl o)`
`boolean`	`addObjectProperty(aterm.ATerm p)` Add a new object property.
`void`	`addObjectPropertyValue(aterm.ATermAppl p, aterm.ATermAppl s, aterm.ATermAppl o)` Deprecated. Use addPropertyValue instead
`void`	`addOntologyProperty(aterm.ATermAppl p)` Deprecated.
`void`	`addProperty(aterm.ATermAppl p)`
`boolean`	`addPropertyValue(aterm.ATermAppl p, aterm.ATermAppl s, aterm.ATermAppl o)`
`void`	`addRange(aterm.ATerm p, aterm.ATermAppl c)`
`void`	`addRange(aterm.ATerm p, aterm.ATermAppl c, Set<aterm.ATermAppl> explain)` For internal use when range axioms come from TBox absorption
`void`	`addReflexiveProperty(aterm.ATermAppl p)`
`boolean`	`addRule(Rule rule)` Add a rule to the KB.
`void`	`addSame(aterm.ATermAppl i1, aterm.ATermAppl i2)`
`void`	`addSubClass(aterm.ATermAppl sub, aterm.ATermAppl sup)`
`void`	`addSubProperty(aterm.ATerm sub, aterm.ATermAppl sup)`
`void`	`addSymmetricProperty(aterm.ATermAppl p)`
`void`	`addTransitiveProperty(aterm.ATermAppl p)`
`void`	`addType(aterm.ATermAppl i, aterm.ATermAppl c)`
`void`	`addType(aterm.ATermAppl i, aterm.ATermAppl c, DependencySet ds)`
`void`	`binaryInstanceRetrieval(aterm.ATermAppl c, List<aterm.ATermAppl> candidates, Collection<aterm.ATermAppl> results)`
`protected boolean`	`canUseIncConsistency()` Check if we can use incremental consistency checking
`void`	`classify()`
`void`	`clear()`
`void`	`clearABox()`
`KnowledgeBase`	`copy()` Create a copy of this KB with a completely new ABox copy but pointing to the same RBox and TBox.
`KnowledgeBase`	`copy(boolean emptyABox)` Create a copy of this KB.
`boolean`	`doExplanation()`
`void`	`ensureConsistency()`
`void`	`ensureIncConsistency(boolean aboxDeletion)`
`ABox`	`getABox()`
`Set<aterm.ATermAppl>`	`getABoxAssertions(KnowledgeBase.AssertionType assertionType)`
`Set<aterm.ATermAppl>`	`getAboxDataRoleAssertions()` Deprecated. Use `getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType)` instead
`Set<aterm.ATermAppl>`	`getAboxMembershipAssertions()` Deprecated. Use `getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType)` instead
`Set<aterm.ATermAppl>`	`getAboxObjectRoleAssertions()` Deprecated. Use `getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType)` instead
`Set<aterm.ATermAppl>`	`getAllClasses()` Return the set of all named classes including TOP and BOTTOM.
`Set<aterm.ATermAppl>`	`getAllEquivalentClasses(aterm.ATermAppl c)` Returns all the classes that are equivalent to class c, including c itself.
`Set<aterm.ATermAppl>`	`getAllEquivalentProperties(aterm.ATermAppl prop)`
`Set<aterm.ATermAppl>`	`getAllSames(aterm.ATermAppl name)` Return all the indviduals asserted to be equal to the given individual inluding the individual itself.
`Set<Set<aterm.ATermAppl>>`	`getAllSubProperties(aterm.ATermAppl prop)`
`Set<Set<aterm.ATermAppl>>`	`getAllSuperProperties(aterm.ATermAppl prop)`
`Set<aterm.ATermAppl>`	`getAllUnsatisfiableClasses()` Returns all unsatisfiable classes in the KB including the BOTTOM concept.
`Set<aterm.ATermAppl>`	`getAnnotationProperties()`
`Set<aterm.ATermAppl>`	`getAnnotations(aterm.ATermAppl s, aterm.ATermAppl p)`
`Set<aterm.ATermAppl>`	`getAnnotationSubjects()` Returns the set of key values of the annotations map
`Set<aterm.ATermAppl>`	`getAntisymmetricProperties()` Deprecated. Use `getAntisymmetricProperties()`
`Set<aterm.ATermAppl>`	`getAsymmetricProperties()`
`Set<aterm.ATermAppl>`	`getClasses()` Return the set of all named classes.
`Set<aterm.ATermAppl>`	`getComplements(aterm.ATermAppl c)`
`Set<aterm.ATermAppl>`	`getDataProperties()` Return the set of all object properties.
`List<aterm.ATermAppl>`	`getDataPropertyValues(aterm.ATermAppl r, aterm.ATermAppl x)` Return all literal values for a given dataproperty and subject value.
`List<aterm.ATermAppl>`	`getDataPropertyValues(aterm.ATermAppl r, aterm.ATermAppl x, aterm.ATermAppl datatype)` Return all literal values for a given dataproperty that belongs to the specified datatype.
`List<aterm.ATermAppl>`	`getDataPropertyValues(aterm.ATermAppl r, aterm.ATermAppl x, String lang)` Return all literal values for a given dataproperty that has the specified language identifier.
`DatatypeReasoner`	`getDatatypeReasoner()`
`Set<aterm.ATermAppl>`	`getDeletedAssertions()`
`DependencyIndex`	`getDependencyIndex()` Get the dependency index for syntactic assertions in this kb
`Set<aterm.ATermAppl>`	`getDifferents(aterm.ATermAppl name)`
`Set<Set<aterm.ATermAppl>>`	`getDisjointClasses(aterm.ATermAppl c)`
`Set<Set<aterm.ATermAppl>>`	`getDisjointClasses(aterm.ATermAppl c, boolean direct)`
`Set<Set<aterm.ATermAppl>>`	`getDisjointProperties(aterm.ATermAppl p)`
`Set<Set<aterm.ATermAppl>>`	`getDisjointProperties(aterm.ATermAppl p, boolean direct)`
`Set<Set<aterm.ATermAppl>>`	`getDisjoints(aterm.ATermAppl c)`
`boolean`	`getDoDependencyAxioms()` Deprecated. Use getExplanation instead
`Set<aterm.ATermAppl>`	`getDomains(aterm.ATermAppl name)` Return the domain restrictions on the property.
`Set<aterm.ATermAppl>`	`getEquivalentClasses(aterm.ATermAppl c)` Returns all the classes that are equivalent to class c, excluding c itself.
`Set<aterm.ATermAppl>`	`getEquivalentProperties(aterm.ATermAppl prop)` Return all the properties that are equivalent to p.
`String`	`getExplanation()`
`Set<aterm.ATermAppl>`	`getExplanationSet()`
`Expressivity`	`getExpressivity()`
`ExpressivityChecker`	`getExpressivityChecker()`
`Set<aterm.ATermAppl>`	`getFunctionalProperties()`
`Set<aterm.ATermAppl>`	`getIndividuals()` Return the set of all individuals.
`Set<aterm.ATermAppl>`	`getIndividualsWithAnnotation(aterm.ATermAppl p, aterm.ATermAppl o)`
`List<aterm.ATermAppl>`	`getIndividualsWithDataProperty(aterm.ATermAppl r, aterm.ATermAppl litValue)` List all subjects with the given literal value for the specified data property.
`List<aterm.ATermAppl>`	`getIndividualsWithObjectProperty(aterm.ATermAppl r, aterm.ATermAppl o)` List all subjects with the given value for the specified object property.
`List<aterm.ATermAppl>`	`getIndividualsWithProperty(aterm.ATermAppl r, aterm.ATermAppl x)` List all subjects with a given property and property value.
`String`	`getInfo()`
`Set<aterm.ATermAppl>`	`getInstances(aterm.ATermAppl c)` Returns all the instances of concept c.
`Set<aterm.ATermAppl>`	`getInstances(aterm.ATermAppl c, boolean direct)` Returns the instances of class c.
`aterm.ATermAppl`	`getInverse(aterm.ATerm name)` Returns the inverse of given property.
`Set<aterm.ATermAppl>`	`getInverseFunctionalProperties()`
`Set<aterm.ATermAppl>`	`getInverses(aterm.ATerm name)` Return the named inverse property and all its equivalent properties.
`Set<aterm.ATermAppl>`	`getIrreflexiveProperties()`
`Map<Rule,Rule>`	`getNormalizedRules()` Return the asserted rules with their normalized form.
`Set<aterm.ATermAppl>`	`getObjectProperties()` Return the set of all object properties.
`List<aterm.ATermAppl>`	`getObjectPropertyValues(aterm.ATermAppl r, aterm.ATermAppl x)` Return all property values for a given object property and subject value.
`Set<aterm.ATermAppl>`	`getProperties()` Return the set of all properties.
`List<aterm.ATermAppl>`	`getProperties(aterm.ATermAppl s, aterm.ATermAppl o)` List all properties asserted between a subject and object.
`Role`	`getProperty(aterm.ATerm r)`
`PropertyType`	`getPropertyType(aterm.ATerm r)`
`Map<aterm.ATermAppl,List<aterm.ATermAppl>>`	`getPropertyValues(aterm.ATermAppl pred)`
`List<aterm.ATermAppl>`	`getPropertyValues(aterm.ATermAppl r, aterm.ATermAppl x)` Return all property values for a given property and subject value.
`Set<aterm.ATermAppl>`	`getRanges(aterm.ATerm name)` Return the domain restrictions on the property.
`RBox`	`getRBox()`
`Set<aterm.ATermAppl>`	`getReflexiveProperties()`
`Role`	`getRole(aterm.ATerm term)`
`Taxonomy<aterm.ATermAppl>`	`getRoleTaxonomy(aterm.ATermAppl r)`
`Taxonomy<aterm.ATermAppl>`	`getRoleTaxonomy(boolean objectTaxonomy)`
`Set<Rule>`	`getRules()` Return all the asserted rules.
`Set<aterm.ATermAppl>`	`getSames(aterm.ATermAppl name)` Return all the individuals asserted to be equal to the given individual but not the the individual itself.
`SizeEstimate`	`getSizeEstimate()`
`Set<Set<aterm.ATermAppl>>`	`getSubClasses(aterm.ATermAppl c)` Returns all the (named) subclasses of class c.
`Set<Set<aterm.ATermAppl>>`	`getSubClasses(aterm.ATermAppl c, boolean direct)` Returns the (named) subclasses of class c.
`Set<Set<aterm.ATermAppl>>`	`getSubProperties(aterm.ATermAppl prop)` Return all the sub properties of p.
`Set<Set<aterm.ATermAppl>>`	`getSubProperties(aterm.ATermAppl prop, boolean direct)` Return the sub properties of p.
`Set<Set<aterm.ATermAppl>>`	`getSuperClasses(aterm.ATermAppl c)` Returns all the superclasses (implicitly or explicitly defined) of class c.
`Set<Set<aterm.ATermAppl>>`	`getSuperClasses(aterm.ATermAppl c, boolean direct)` Returns the (named) superclasses of class c.
`Set<Set<aterm.ATermAppl>>`	`getSuperProperties(aterm.ATermAppl prop)` Return all the super properties of p.
`Set<Set<aterm.ATermAppl>>`	`getSuperProperties(aterm.ATermAppl prop, boolean direct)` Return the super properties of p.
`Set<aterm.ATermAppl>`	`getSymmetricProperties()`
`Set<aterm.ATermAppl>`	`getSyntacticAssertions()` Get syntactic assertions in the kb
`Taxonomy<aterm.ATermAppl>`	`getTaxonomy()` Get the classification results.
`TaxonomyBuilder`	`getTaxonomyBuilder()`
`TBox`	`getTBox()`
`Map<aterm.ATermAppl,Set<aterm.ATermAppl>>`	`getToldDisjoints()`
`Taxonomy<aterm.ATermAppl>`	`getToldTaxonomy()`
`Set<aterm.ATermAppl>`	`getTransitiveProperties()`
`aterm.ATermAppl`	`getType(aterm.ATermAppl ind)`
`aterm.ATermAppl`	`getType(aterm.ATermAppl ind, boolean direct)`
`Set<Set<aterm.ATermAppl>>`	`getTypes(aterm.ATermAppl ind)` Get all the (named) classes individual belongs to.
`Set<Set<aterm.ATermAppl>>`	`getTypes(aterm.ATermAppl ind, boolean direct)` Returns the (named) classes individual belongs to.
`Set<aterm.ATermAppl>`	`getUnsatisfiableClasses()` Returns all unsatisfiable classes in the KB excluding the BOTTOM concept.
`protected static void`	`handleUndefinedEntity(String s)`
`boolean`	`hasDomain(aterm.ATermAppl p, aterm.ATermAppl c)`
`boolean`	`hasInstance(aterm.ATerm d)` Returns true if there is at least one named individual that belongs to the given class
`Bool`	`hasKnownPropertyValue(aterm.ATermAppl s, aterm.ATermAppl p, aterm.ATermAppl o)` Answers the hasPropertyValue question without doing any satisfiability check.
`boolean`	`hasPropertyValue(aterm.ATermAppl s, aterm.ATermAppl p, aterm.ATermAppl o)`
`boolean`	`hasRange(aterm.ATermAppl p, aterm.ATermAppl c)`
`boolean`	`isABoxChanged()`
`boolean`	`isABoxProperty(aterm.ATerm p)`
`boolean`	`isAnnotation(aterm.ATermAppl s, aterm.ATermAppl p, aterm.ATermAppl o)`
`boolean`	`isAnnotationProperty(aterm.ATerm p)`
`boolean`	`isAntisymmetricProperty(aterm.ATermAppl p)` Deprecated. Use `isAsymmetricProperty(ATermAppl)`
`boolean`	`isAsymmetricProperty(aterm.ATermAppl p)`
`boolean`	`isChanged()`
`boolean`	`isChanged(KnowledgeBase.ChangeType change)`
`boolean`	`isClass(aterm.ATerm c)`
`boolean`	`isClassified()` Returns true if the classification check has been done and nothing in the KB has changed after that.
`boolean`	`isComplement(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`boolean`	`isConsistencyDone()` Returns true if the consistency check has been done and nothing in th KB has changed after that.
`boolean`	`isConsistent()`
`boolean`	`isDatatype(aterm.ATermAppl c)`
`boolean`	`isDatatypeProperty(aterm.ATerm p)`
`boolean`	`isDifferentFrom(aterm.ATermAppl t1, aterm.ATermAppl t2)`
`boolean`	`isDisjoint(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`boolean`	`isDisjointClass(aterm.ATermAppl c1, aterm.ATermAppl c2)`
`boolean`	`isDisjointProperty(aterm.ATermAppl r1, aterm.ATermAppl r2)`
`boolean`	`isEquivalentClass(aterm.ATermAppl c1, aterm.ATermAppl c2)` Check if class c1 is equivalent to class c2.
`boolean`	`isEquivalentProperty(aterm.ATermAppl p1, aterm.ATermAppl p2)`
`boolean`	`isExplainOnlyInconsistency()` Returns current value of explainOnlyInconsistency option.
`boolean`	`isFunctionalProperty(aterm.ATermAppl p)`
`boolean`	`isIndividual(aterm.ATerm ind)`
`boolean`	`isInverse(aterm.ATermAppl r1, aterm.ATermAppl r2)`
`boolean`	`isInverseFunctionalProperty(aterm.ATermAppl p)`
`boolean`	`isIrreflexiveProperty(aterm.ATermAppl p)`
`Bool`	`isKnownType(aterm.ATermAppl x, aterm.ATermAppl c)` Answers the isType question without doing any satisfiability check.
`boolean`	`isObjectProperty(aterm.ATerm p)`
`boolean`	`isOntologyProperty(aterm.ATerm p)` Deprecated.
`boolean`	`isProperty(aterm.ATerm p)`
`boolean`	`isRBoxChanged()`
`boolean`	`isRealized()`
`boolean`	`isReflexiveProperty(aterm.ATermAppl p)`
`boolean`	`isSameAs(aterm.ATermAppl t1, aterm.ATermAppl t2)`
`boolean`	`isSatisfiable(aterm.ATermAppl c)`
`boolean`	`isSubClassOf(aterm.ATermAppl c1, aterm.ATermAppl c2)` Check if class c1 is subclass of class c2.
`boolean`	`isSubPropertyOf(aterm.ATermAppl sub, aterm.ATermAppl sup)`
`boolean`	`isSymmetricProperty(aterm.ATermAppl p)`
`boolean`	`isTBoxChanged()`
`boolean`	`isTransitiveProperty(aterm.ATermAppl r)`
`boolean`	`isType(aterm.ATermAppl x, aterm.ATermAppl c)`
`void`	`linearInstanceRetrieval(aterm.ATermAppl c, List<aterm.ATermAppl> candidates, Collection<aterm.ATermAppl> results)`
`void`	`loadKRSS(Reader reader)`
`void`	`prepare()`
`void`	`printClassTree()` Print the class hierarchy on the standard output.
`void`	`printClassTree(PrintWriter out)`
`void`	`realize()`
`boolean`	`removeAxiom(aterm.ATermAppl axiom)` Removes (if possible) the given TBox axiom from the KB and return `true` if removal was successful.
`boolean`	`removeDomain(aterm.ATerm p, aterm.ATermAppl c)` Removes (if possible) the given property domain axiom from the KB and return `true` if removal was successful.
`boolean`	`removePropertyValue(aterm.ATermAppl p, aterm.ATermAppl i1, aterm.ATermAppl i2)`
`boolean`	`removeRange(aterm.ATerm p, aterm.ATermAppl c)` Removes (if possible) the given property range axiom from the KB and return `true` if removal was successful.
`boolean`	`removeType(aterm.ATermAppl ind, aterm.ATermAppl c)`
`Set<aterm.ATermAppl>`	`retrieve(aterm.ATermAppl d, Collection<aterm.ATermAppl> individuals)` Return all the individuals that belong to the given class which is not necessarily a named class.
`List<aterm.ATermAppl>`	`retrieveIndividualsWithProperty(aterm.ATermAppl r)` Retrieve individuals which possibly have a property value for the given property.
`void`	`setDoDependencyAxioms(boolean doDepAxioms)` Deprecated. Use setDoExplanation instead
`void`	`setDoExplanation(boolean doExplanation)`
`void`	`setExplainOnlyInconsistency(boolean explainOnlyInconsistency)` Controls what kind of explanations can be generated using this KB.
`void`	`setRBox(RBox rbox)`
`void`	`setTaxonomyBuilderProgressMonitor(ProgressMonitor progressMonitor)`
`void`	`setTBox(TBox tbox)`
`void`	`setTimeout(long timeout)` Set a timeout for the main timer.
`void`	`tracingBasedInstanceRetrieval(aterm.ATermAppl c, List<aterm.ATermAppl> candidates, Collection<aterm.ATermAppl> results)`
`void`	`updateExpressivity(aterm.ATermAppl i, aterm.ATermAppl c)` This method is used for incremental reasoning.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - log
```
public static final Logger log
```
  - abox
```
protected ABox abox
```
  - tbox
```
protected TBox tbox
```
  - rbox
```
protected RBox rbox
```
  - builder
```
protected TaxonomyBuilder builder
```
  - state
```
protected EnumSet<KnowledgeBase.ReasoningState> state
```
  - timers
```
public Timers timers
```
    Timers used in various different parts of KB. There may be many different timers created here depending on the level of debugging or application requirements. However, there are three major timers that are guaranteed to exist.
    - main - This is the main timer that exists in any Timers objects. All the other timers defined in here will have this timer as its dependant so setting a timeout on this timer will put a limit on every operation done inside KB.
    - preprocessing - This is the operation where TBox creation, absorbtion and normalization is done. It also includes computing hierarchy of properties in RBox and merging the individuals in ABox if there are explicit sameAs assertions.
    - consistency - This is the timer for ABox consistency check. Putting a timeout will mean that any single consistency check should be completed in a certain amount of time.
  - aboxAssertions
```
protected MultiValueMap<KnowledgeBase.AssertionType,aterm.ATermAppl> aboxAssertions
```
  - changes
```
protected EnumSet<KnowledgeBase.ChangeType> changes
```
  - canUseIncConsistency
```
protected boolean canUseIncConsistency
```
- Constructor Detail
  - KnowledgeBase
```
public KnowledgeBase()
```
  - KnowledgeBase
```
protected KnowledgeBase(KnowledgeBase kb,
                        boolean emptyABox)
```
    Create a KB based on an existing one. New KB has a copy of the ABox but TBox and RBox is shared between two.
    
    Parameters:
    
    kb -
- Method Detail
  - getExpressivity
```
public Expressivity getExpressivity()
```
  - getExpressivityChecker
```
public ExpressivityChecker getExpressivityChecker()
```
  - clear
```
public void clear()
```
  - clearABox
```
public void clearABox()
```
  - copy
```
public KnowledgeBase copy()
```
    Create a copy of this KB with a completely new ABox copy but pointing to the same RBox and TBox.
    
    Returns:
    
    A copy of this KB
  - copy
```
public KnowledgeBase copy(boolean emptyABox)
```
    Create a copy of this KB. Depending on the value of emptyABox either a completely new copy of ABox will be created or the new KB will have an empty ABox. If emptyABox parameter is true but the original KB contains nominals in its RBox or TBox the new KB will have the definition of those individuals (but not ) In either case, the new KB will point to the same RBox and TBox so changing one KB's RBox or TBox will affect other.
    
    Parameters:
    
    emptyABox - If true ABox is not copied to the new KB
    
    Returns:
    
    A copy of this KB
  - loadKRSS
```
public void loadKRSS(Reader reader)
              throws IOException
```
    Throws:
    
    IOException
  - addClass
```
public void addClass(aterm.ATermAppl c)
```
  - addSubClass
```
public void addSubClass(aterm.ATermAppl sub,
                        aterm.ATermAppl sup)
```
  - addEquivalentClass
```
public void addEquivalentClass(aterm.ATermAppl c1,
                               aterm.ATermAppl c2)
```
  - addKey
```
public void addKey(aterm.ATermAppl c,
                   Set<aterm.ATermAppl> properties)
```
  - addDisjointClasses
```
public void addDisjointClasses(aterm.ATermList classes)
```
  - addDisjointClasses
```
public void addDisjointClasses(List<aterm.ATermAppl> classes)
```
  - addDisjointClass
```
public void addDisjointClass(aterm.ATermAppl c1,
                             aterm.ATermAppl c2)
```
  - addComplementClass
```
public void addComplementClass(aterm.ATermAppl c1,
                               aterm.ATermAppl c2)
```
  - addDataPropertyValue
```
public void addDataPropertyValue(aterm.ATermAppl p,
                                 aterm.ATermAppl s,
                                 aterm.ATermAppl o)
```
    Deprecated. Use addPropertyValue instead
    
    Add the value of a DatatypeProperty.
    
    Parameters:
    
    p - Datatype Property
    
    ind - Individual value being added to
    
    literalValue - A literal ATerm which should be constructed with one of ATermUtils.makeXXXLiteral functions
  - addIndividual
```
public Individual addIndividual(aterm.ATermAppl i)
```
  - addType
```
public void addType(aterm.ATermAppl i,
                    aterm.ATermAppl c)
```
  - addType
```
public void addType(aterm.ATermAppl i,
                    aterm.ATermAppl c,
                    DependencySet ds)
```
  - addSame
```
public void addSame(aterm.ATermAppl i1,
                    aterm.ATermAppl i2)
```
  - addAllDifferent
```
public void addAllDifferent(aterm.ATermList list)
```
  - addDifferent
```
public void addDifferent(aterm.ATermAppl i1,
                         aterm.ATermAppl i2)
```
  - addObjectPropertyValue
```
public void addObjectPropertyValue(aterm.ATermAppl p,
                                   aterm.ATermAppl s,
                                   aterm.ATermAppl o)
```
    Deprecated. Use addPropertyValue instead
  - addPropertyValue
```
public boolean addPropertyValue(aterm.ATermAppl p,
                                aterm.ATermAppl s,
                                aterm.ATermAppl o)
```
  - addNegatedPropertyValue
```
public boolean addNegatedPropertyValue(aterm.ATermAppl p,
                                       aterm.ATermAppl s,
                                       aterm.ATermAppl o)
```
  - addProperty
```
public void addProperty(aterm.ATermAppl p)
```
  - addObjectProperty
```
public boolean addObjectProperty(aterm.ATerm p)
```
    Add a new object property. If property was earlier defined to be a datatype property then this function will simply return without changing the KB.
    
    Parameters:
    
    p - Name of the property
    
    Returns:
    
    True if property is added, false if not
  - addDatatypeProperty
```
public boolean addDatatypeProperty(aterm.ATerm p)
```
    Add a new object property. If property was earlier defined to be a datatype property then this function will simply return without changing the KB.
    
    Parameters:
    
    p -
    
    Returns:
    
    True if property is added, false if not
  - addOntologyProperty
```
@Deprecated
public void addOntologyProperty(aterm.ATermAppl p)
```
    Deprecated.
  - addAnnotationProperty
```
public boolean addAnnotationProperty(aterm.ATerm p)
```
  - addAnnotation
```
public boolean addAnnotation(aterm.ATermAppl s,
                             aterm.ATermAppl p,
                             aterm.ATermAppl o)
```
  - getAnnotations
```
public Set<aterm.ATermAppl> getAnnotations(aterm.ATermAppl s,
                                           aterm.ATermAppl p)
```
  - getIndividualsWithAnnotation
```
public Set<aterm.ATermAppl> getIndividualsWithAnnotation(aterm.ATermAppl p,
                                                         aterm.ATermAppl o)
```
  - isAnnotation
```
public boolean isAnnotation(aterm.ATermAppl s,
                            aterm.ATermAppl p,
                            aterm.ATermAppl o)
```
  - addSubProperty
```
public void addSubProperty(aterm.ATerm sub,
                           aterm.ATermAppl sup)
```
  - addEquivalentProperty
```
public void addEquivalentProperty(aterm.ATermAppl p1,
                                  aterm.ATermAppl p2)
```
  - addDisjointProperties
```
public void addDisjointProperties(aterm.ATermList properties)
```
  - addDisjointProperties
```
public void addDisjointProperties(List<aterm.ATermAppl> properties)
```
  - addDisjointProperty
```
public void addDisjointProperty(aterm.ATermAppl p1,
                                aterm.ATermAppl p2)
```
  - addDisjointProperty
```
public void addDisjointProperty(aterm.ATermAppl p1,
                                aterm.ATermAppl p2,
                                DependencySet ds)
```
  - addInverseProperty
```
public void addInverseProperty(aterm.ATermAppl p1,
                               aterm.ATermAppl p2)
```
  - addTransitiveProperty
```
public void addTransitiveProperty(aterm.ATermAppl p)
```
  - addSymmetricProperty
```
public void addSymmetricProperty(aterm.ATermAppl p)
```
  - addAntisymmetricProperty
```
public void addAntisymmetricProperty(aterm.ATermAppl p)
```
    Deprecated. Use addAsymmetricProperty(ATermAppl)
  - addAsymmetricProperty
```
public void addAsymmetricProperty(aterm.ATermAppl p)
```
  - addReflexiveProperty
```
public void addReflexiveProperty(aterm.ATermAppl p)
```
  - addIrreflexiveProperty
```
public void addIrreflexiveProperty(aterm.ATermAppl p)
```
  - addFunctionalProperty
```
public void addFunctionalProperty(aterm.ATermAppl p)
```
  - addInverseFunctionalProperty
```
public void addInverseFunctionalProperty(aterm.ATerm p)
```
  - addDomain
```
public void addDomain(aterm.ATerm p,
                      aterm.ATermAppl c)
```
  - addDomain
```
public void addDomain(aterm.ATerm p,
                      aterm.ATermAppl c,
                      Set<aterm.ATermAppl> explain)
```
    For internal use when domain axioms come from TBox absorption
  - addRange
```
public void addRange(aterm.ATerm p,
                     aterm.ATermAppl c)
```
  - addRange
```
public void addRange(aterm.ATerm p,
                     aterm.ATermAppl c,
                     Set<aterm.ATermAppl> explain)
```
    For internal use when range axioms come from TBox absorption
  - addDatatype
```
public void addDatatype(aterm.ATermAppl p)
```
  - addDatatypeDefinition
```
public boolean addDatatypeDefinition(aterm.ATermAppl name,
                                     aterm.ATermAppl datarange)
```
    Adds a new datatype defined to be equivalent to the given data range expression.
    
    Parameters:
    
    name - name of the datatype
    
    datarange - a data range expression
    
    Returns:
  - removeDomain
```
public boolean removeDomain(aterm.ATerm p,
                            aterm.ATermAppl c)
```
    Removes (if possible) the given property domain axiom from the KB and return true if removal was successful. See also addDomain(ATerm, ATermAppl).
    
    Parameters:
    
    p - Property in domain axiom
    
    c - Class in domain axiom
    
    Returns:
    
    true if axiom is removed, false if removal failed
  - removePropertyValue
```
public boolean removePropertyValue(aterm.ATermAppl p,
                                   aterm.ATermAppl i1,
                                   aterm.ATermAppl i2)
```
  - removeRange
```
public boolean removeRange(aterm.ATerm p,
                           aterm.ATermAppl c)
```
    Removes (if possible) the given property range axiom from the KB and return true if removal was successful. See also addRange(ATerm, ATermAppl).
    
    Parameters:
    
    p - Property in range axiom
    
    c - Class or datatype in range axiom
    
    Returns:
    
    true if axiom is removed, false if removal failed
  - removeType
```
public boolean removeType(aterm.ATermAppl ind,
                          aterm.ATermAppl c)
```
  - removeAxiom
```
public boolean removeAxiom(aterm.ATermAppl axiom)
```
    Removes (if possible) the given TBox axiom from the KB and return true if removal was successful.
    
    Parameters:
    
    axiom - TBox axiom to remove
    
    Returns:
    
    true if axiom is removed, false if removal failed
  - prepare
```
public void prepare()
```
  - updateExpressivity
```
public void updateExpressivity(aterm.ATermAppl i,
                               aterm.ATermAppl c)
```
    This method is used for incremental reasoning. We do not want to recompute the expressivity from scratch.
  - getInfo
```
public String getInfo()
```
  - isConsistencyDone
```
public boolean isConsistencyDone()
```
    Returns true if the consistency check has been done and nothing in th KB has changed after that.
  - isClassified
```
public boolean isClassified()
```
    Returns true if the classification check has been done and nothing in the KB has changed after that.
  - isRealized
```
public boolean isRealized()
```
  - isChanged
```
public boolean isChanged()
```
  - isChanged
```
public boolean isChanged(KnowledgeBase.ChangeType change)
```
  - isTBoxChanged
```
public boolean isTBoxChanged()
```
  - isRBoxChanged
```
public boolean isRBoxChanged()
```
  - isABoxChanged
```
public boolean isABoxChanged()
```
  - getUnsatisfiableClasses
```
public Set<aterm.ATermAppl> getUnsatisfiableClasses()
```
    Returns all unsatisfiable classes in the KB excluding the BOTTOM concept. The result may be empty if there is no user-defined concept in the KB that is unsatisfiable.
    
    Returns:
    
    all unsatisfiable classes in the KB excluding the BOTTOM concept
  - getAllUnsatisfiableClasses
```
public Set<aterm.ATermAppl> getAllUnsatisfiableClasses()
```
    Returns all unsatisfiable classes in the KB including the BOTTOM concept. Since BOTTOM concept is built-in the result will always have at least one element.
    
    Returns:
    
    all unsatisfiable classes in the KB including the BOTTOM concept
  - isConsistent
```
public boolean isConsistent()
```
  - getToldTaxonomy
```
public Taxonomy<aterm.ATermAppl> getToldTaxonomy()
```
  - getToldDisjoints
```
public Map<aterm.ATermAppl,Set<aterm.ATermAppl>> getToldDisjoints()
```
  - ensureConsistency
```
public void ensureConsistency()
```
  - classify
```
public void classify()
```
  - realize
```
public void realize()
```
  - getClasses
```
public Set<aterm.ATermAppl> getClasses()
```
    Return the set of all named classes. Returned set is unmodifiable!
    
    Returns:
  - getAllClasses
```
public Set<aterm.ATermAppl> getAllClasses()
```
    Return the set of all named classes including TOP and BOTTOM. Returned set is modifiable.
    
    Returns:
  - getProperties
```
public Set<aterm.ATermAppl> getProperties()
```
    Return the set of all properties.
    
    Returns:
  - getObjectProperties
```
public Set<aterm.ATermAppl> getObjectProperties()
```
    Return the set of all object properties.
    
    Returns:
  - getAnnotationProperties
```
public Set<aterm.ATermAppl> getAnnotationProperties()
```
  - getTransitiveProperties
```
public Set<aterm.ATermAppl> getTransitiveProperties()
```
  - getSymmetricProperties
```
public Set<aterm.ATermAppl> getSymmetricProperties()
```
  - getAntisymmetricProperties
```
public Set<aterm.ATermAppl> getAntisymmetricProperties()
```
    Deprecated. Use getAntisymmetricProperties()
  - getAsymmetricProperties
```
public Set<aterm.ATermAppl> getAsymmetricProperties()
```
  - getReflexiveProperties
```
public Set<aterm.ATermAppl> getReflexiveProperties()
```
  - getIrreflexiveProperties
```
public Set<aterm.ATermAppl> getIrreflexiveProperties()
```
  - getFunctionalProperties
```
public Set<aterm.ATermAppl> getFunctionalProperties()
```
  - getInverseFunctionalProperties
```
public Set<aterm.ATermAppl> getInverseFunctionalProperties()
```
  - getDataProperties
```
public Set<aterm.ATermAppl> getDataProperties()
```
    Return the set of all object properties.
    
    Returns:
  - getIndividuals
```
public Set<aterm.ATermAppl> getIndividuals()
```
    Return the set of all individuals. Returned set is unmodifiable!
    
    Returns:
  - getAnnotationSubjects
```
public Set<aterm.ATermAppl> getAnnotationSubjects()
```
    Returns the set of key values of the annotations map
    
    Returns:
  - getProperty
```
public Role getProperty(aterm.ATerm r)
```
  - getPropertyType
```
public PropertyType getPropertyType(aterm.ATerm r)
```
  - isClass
```
public boolean isClass(aterm.ATerm c)
```
  - isProperty
```
public boolean isProperty(aterm.ATerm p)
```
  - isDatatypeProperty
```
public boolean isDatatypeProperty(aterm.ATerm p)
```
  - isObjectProperty
```
public boolean isObjectProperty(aterm.ATerm p)
```
  - isABoxProperty
```
public boolean isABoxProperty(aterm.ATerm p)
```
  - isAnnotationProperty
```
public boolean isAnnotationProperty(aterm.ATerm p)
```
  - isOntologyProperty
```
@Deprecated
public boolean isOntologyProperty(aterm.ATerm p)
```
    Deprecated.
  - isIndividual
```
public boolean isIndividual(aterm.ATerm ind)
```
  - isTransitiveProperty
```
public boolean isTransitiveProperty(aterm.ATermAppl r)
```
  - isSymmetricProperty
```
public boolean isSymmetricProperty(aterm.ATermAppl p)
```
  - isFunctionalProperty
```
public boolean isFunctionalProperty(aterm.ATermAppl p)
```
  - isInverseFunctionalProperty
```
public boolean isInverseFunctionalProperty(aterm.ATermAppl p)
```
  - isReflexiveProperty
```
public boolean isReflexiveProperty(aterm.ATermAppl p)
```
  - isIrreflexiveProperty
```
public boolean isIrreflexiveProperty(aterm.ATermAppl p)
```
  - isAntisymmetricProperty
```
public boolean isAntisymmetricProperty(aterm.ATermAppl p)
```
    Deprecated. Use isAsymmetricProperty(ATermAppl)
  - isAsymmetricProperty
```
public boolean isAsymmetricProperty(aterm.ATermAppl p)
```
  - isSubPropertyOf
```
public boolean isSubPropertyOf(aterm.ATermAppl sub,
                               aterm.ATermAppl sup)
```
  - isEquivalentProperty
```
public boolean isEquivalentProperty(aterm.ATermAppl p1,
                                    aterm.ATermAppl p2)
```
  - isInverse
```
public boolean isInverse(aterm.ATermAppl r1,
                         aterm.ATermAppl r2)
```
  - hasDomain
```
public boolean hasDomain(aterm.ATermAppl p,
                         aterm.ATermAppl c)
```
  - hasRange
```
public boolean hasRange(aterm.ATermAppl p,
                        aterm.ATermAppl c)
```
  - isDatatype
```
public boolean isDatatype(aterm.ATermAppl c)
```
  - isSatisfiable
```
public boolean isSatisfiable(aterm.ATermAppl c)
```
  - hasInstance
```
public boolean hasInstance(aterm.ATerm d)
```
    Returns true if there is at least one named individual that belongs to the given class
    
    Parameters:
    
    c -
    
    Returns:
  - isSubClassOf
```
public boolean isSubClassOf(aterm.ATermAppl c1,
                            aterm.ATermAppl c2)
```
    Check if class c1 is subclass of class c2.
    
    Parameters:
    
    c1 -
    
    c2 -
    
    Returns:
  - isEquivalentClass
```
public boolean isEquivalentClass(aterm.ATermAppl c1,
                                 aterm.ATermAppl c2)
```
    Check if class c1 is equivalent to class c2.
    
    Parameters:
    
    c1 -
    
    c2 -
    
    Returns:
  - isDisjoint
```
public boolean isDisjoint(aterm.ATermAppl c1,
                          aterm.ATermAppl c2)
```
  - isDisjointClass
```
public boolean isDisjointClass(aterm.ATermAppl c1,
                               aterm.ATermAppl c2)
```
  - isDisjointProperty
```
public boolean isDisjointProperty(aterm.ATermAppl r1,
                                  aterm.ATermAppl r2)
```
  - isComplement
```
public boolean isComplement(aterm.ATermAppl c1,
                            aterm.ATermAppl c2)
```
  - isKnownType
```
public Bool isKnownType(aterm.ATermAppl x,
                        aterm.ATermAppl c)
```
    Answers the isType question without doing any satisfiability check. It might return Bool.TRUE, Bool.FALSE, or Bool.UNKNOWN. If Bool.UNKNOWN is returned isType function needs to be called to get the answer.
    
    Parameters:
    
    x -
    
    c -
    
    Returns:
  - isType
```
public boolean isType(aterm.ATermAppl x,
                      aterm.ATermAppl c)
```
  - isSameAs
```
public boolean isSameAs(aterm.ATermAppl t1,
                        aterm.ATermAppl t2)
```
  - isDifferentFrom
```
public boolean isDifferentFrom(aterm.ATermAppl t1,
                               aterm.ATermAppl t2)
```
  - getDifferents
```
public Set<aterm.ATermAppl> getDifferents(aterm.ATermAppl name)
```
  - hasPropertyValue
```
public boolean hasPropertyValue(aterm.ATermAppl s,
                                aterm.ATermAppl p,
                                aterm.ATermAppl o)
```
  - hasKnownPropertyValue
```
public Bool hasKnownPropertyValue(aterm.ATermAppl s,
                                  aterm.ATermAppl p,
                                  aterm.ATermAppl o)
```
    Answers the hasPropertyValue question without doing any satisfiability check. It might return Boolean.TRUE, Boolean.FALSE, or null (unknown). If the null value is returned hasPropertyValue function needs to be called to get the answer.
    
    Parameters:
    
    s - Subject
    
    p - Predicate
    
    o - Object (null can be used as wildcard)
    
    Returns:
  - getABox
```
public ABox getABox()
```
    Returns:
    
    Returns the abox.
  - getRBox
```
public RBox getRBox()
```
    Returns:
    
    Returns the rbox.
  - getTBox
```
public TBox getTBox()
```
    Returns:
    
    Returns the tbox.
  - getDatatypeReasoner
```
public DatatypeReasoner getDatatypeReasoner()
```
    Returns:
    
    Returns the DatatypeReasoner
  - getSuperClasses
```
public Set<Set<aterm.ATermAppl>> getSuperClasses(aterm.ATermAppl c,
                                                 boolean direct)
```
    Returns the (named) superclasses of class c. Depending on the second parameter the resulting list will include either all or only the direct superclasses. A class d is a direct superclass of c iff
    1. d is superclass of c
    2. there is no other class x such that x is superclass of c and d is superclass of x
    The class c itself is not included in the list but all the other classes that are sameAs c are put into the list. Also note that the returned list will always have at least one element. The list will either include one other concept from the hierarchy or the TOP concept if no other class subsumes c. By definition TOP concept is superclass of every concept.
    *** This function will first classify the whole ontology ***
    Parameters:
    
    c - class whose superclasses are returned
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getSubClasses
```
public Set<Set<aterm.ATermAppl>> getSubClasses(aterm.ATermAppl c)
```
    Returns all the (named) subclasses of class c. The class c itself is not included in the list but all the other classes that are equivalent to c are put into the list. Also note that the returned list will always have at least one element, that is the BOTTOM concept. By definition BOTTOM concept is subclass of every concept. This function is equivalent to calling getSubClasses(c, true).
    *** This function will first classify the whole ontology ***
    
    Parameters:
    
    c - class whose subclasses are returned
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getDisjoints
```
public Set<Set<aterm.ATermAppl>> getDisjoints(aterm.ATermAppl c)
```
  - getDisjointClasses
```
public Set<Set<aterm.ATermAppl>> getDisjointClasses(aterm.ATermAppl c)
```
  - getDisjointClasses
```
public Set<Set<aterm.ATermAppl>> getDisjointClasses(aterm.ATermAppl c,
                                                    boolean direct)
```
  - getDisjointProperties
```
public Set<Set<aterm.ATermAppl>> getDisjointProperties(aterm.ATermAppl p)
```
  - getDisjointProperties
```
public Set<Set<aterm.ATermAppl>> getDisjointProperties(aterm.ATermAppl p,
                                                       boolean direct)
```
  - getComplements
```
public Set<aterm.ATermAppl> getComplements(aterm.ATermAppl c)
```
  - getTypes
```
public Set<Set<aterm.ATermAppl>> getTypes(aterm.ATermAppl ind,
                                          boolean direct)
```
    Returns the (named) classes individual belongs to. Depending on the second parameter the result will include either all types or only the direct types.
    
    Parameters:
    
    ind - An individual name
    
    direct - If true return only the direct types, otherwise return all types
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getTypes
```
public Set<Set<aterm.ATermAppl>> getTypes(aterm.ATermAppl ind)
```
    Get all the (named) classes individual belongs to.
    *** This function will first realize the whole ontology ***
    
    Parameters:
    
    ind - An individual name
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getType
```
public aterm.ATermAppl getType(aterm.ATermAppl ind)
```
  - getType
```
public aterm.ATermAppl getType(aterm.ATermAppl ind,
                               boolean direct)
```
  - getInstances
```
public Set<aterm.ATermAppl> getInstances(aterm.ATermAppl c)
```
    Returns all the instances of concept c. If TOP concept is used every individual in the knowledge base will be returned
    
    Parameters:
    
    c - class whose instances are returned
    
    Returns:
    
    A set of ATerm objects
  - getInstances
```
public Set<aterm.ATermAppl> getInstances(aterm.ATermAppl c,
                                         boolean direct)
```
    Returns the instances of class c. Depending on the second parameter the resulting list will include all or only the direct instances. An individual x is a direct instance of c iff x is of type c and there is no subclass d of c such that x is of type d.
    *** This function will first realize the whole ontology ***
    
    Parameters:
    
    c - class whose instances are returned
    
    direct - if true return only the direct instances, otherwise return all the instances
    
    Returns:
    
    A set of ATerm objects
  - getEquivalentClasses
```
public Set<aterm.ATermAppl> getEquivalentClasses(aterm.ATermAppl c)
```
    Returns all the classes that are equivalent to class c, excluding c itself.
    *** This function will first classify the whole ontology ***
    
    Parameters:
    
    c - class whose equivalent classes are found
    
    Returns:
    
    A set of ATerm objects
  - getAllEquivalentClasses
```
public Set<aterm.ATermAppl> getAllEquivalentClasses(aterm.ATermAppl c)
```
    Returns all the classes that are equivalent to class c, including c itself.
    *** This function will first classify the whole ontology ***
    
    Parameters:
    
    c - class whose equivalent classes are found
    
    Returns:
    
    A set of ATerm objects
  - getSuperClasses
```
public Set<Set<aterm.ATermAppl>> getSuperClasses(aterm.ATermAppl c)
```
    Returns all the superclasses (implicitly or explicitly defined) of class c. The class c itself is not included in the list. but all the other classes that are sameAs c are put into the list. Also note that the returned list will always have at least one element, that is TOP concept. By definition TOP concept is superclass of every concept. This function is equivalent to calling getSuperClasses(c, true).
    *** This function will first classify the whole ontology ***
    
    Parameters:
    
    c - class whose superclasses are returned
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getSubClasses
```
public Set<Set<aterm.ATermAppl>> getSubClasses(aterm.ATermAppl c,
                                               boolean direct)
```
    Returns the (named) subclasses of class c. Depending on the second parameter the result will include either all subclasses or only the direct subclasses. A class d is a direct subclass of c iff
    1. d is subclass of c
    2. there is no other class x different from c and d such that x is subclass of c and d is subclass of x
    The class c itself is not included in the list but all the other classes that are sameAs c are put into the list. Also note that the returned list will always have at least one element. The list will either include one other concept from the hierarchy or the BOTTOM concept if no other class is subsumed by c. By definition BOTTOM concept is subclass of every concept.
    *** This function will first classify the whole ontology ***
    Parameters:
    
    c - class whose subclasses are returned
    
    direct - If true return only the direct subclasses, otherwise return all the subclasses
    
    Returns:
    
    A set of sets, where each set in the collection represents an equivalence class. The elements of the inner class are ATermAppl objects.
  - getAllSuperProperties
```
public Set<Set<aterm.ATermAppl>> getAllSuperProperties(aterm.ATermAppl prop)
```
  - getSuperProperties
```
public Set<Set<aterm.ATermAppl>> getSuperProperties(aterm.ATermAppl prop)
```
    Return all the super properties of p.
    
    Parameters:
    
    prop -
    
    Returns:
    
    A set of sets, where each set in the collection represents a set of equivalent properties. The elements of the inner class are Role objects.
  - getSuperProperties
```
public Set<Set<aterm.ATermAppl>> getSuperProperties(aterm.ATermAppl prop,
                                                    boolean direct)
```
    Return the super properties of p. Depending on the second parameter the result will include either all super properties or only the direct super properties.
    
    Parameters:
    
    prop -
    
    direct - If true return only the direct super properties, otherwise return all the super properties
    
    Returns:
    
    A set of sets, where each set in the collection represents a set of equivalent properties. The elements of the inner class are Role objects.
  - getAllSubProperties
```
public Set<Set<aterm.ATermAppl>> getAllSubProperties(aterm.ATermAppl prop)
```
  - getSubProperties
```
public Set<Set<aterm.ATermAppl>> getSubProperties(aterm.ATermAppl prop)
```
    Return all the sub properties of p.
    
    Parameters:
    
    prop -
    
    Returns:
    
    A set of sets, where each set in the collection represents a set of equivalent properties. The elements of the inner class are ATermAppl objects.
  - getSubProperties
```
public Set<Set<aterm.ATermAppl>> getSubProperties(aterm.ATermAppl prop,
                                                  boolean direct)
```
    Return the sub properties of p. Depending on the second parameter the result will include either all subproperties or only the direct subproperties.
    
    Parameters:
    
    prop -
    
    direct - If true return only the direct subproperties, otherwise return all the subproperties
    
    Returns:
    
    A set of sets, where each set in the collection represents a set of equivalent properties. The elements of the inner class are ATermAppl objects.
  - getEquivalentProperties
```
public Set<aterm.ATermAppl> getEquivalentProperties(aterm.ATermAppl prop)
```
    Return all the properties that are equivalent to p.
    
    Parameters:
    
    prop -
    
    Returns:
    
    A set of ATermAppl objects.
  - getAllEquivalentProperties
```
public Set<aterm.ATermAppl> getAllEquivalentProperties(aterm.ATermAppl prop)
```
  - getInverses
```
public Set<aterm.ATermAppl> getInverses(aterm.ATerm name)
```
    Return the named inverse property and all its equivalent properties.
    
    Parameters:
    
    prop -
    
    Returns:
  - getInverse
```
public aterm.ATermAppl getInverse(aterm.ATerm name)
```
    Returns the inverse of given property. This could possibly be an internal property created by the reasoner rather than a named property. In case the given property has more than one inverse any one of them can be returned.
    
    Parameters:
    
    name - Property whose inverse being sought
    
    Returns:
    
    Inverse property or null if given property is not defined or it is not an object property
  - getDomains
```
public Set<aterm.ATermAppl> getDomains(aterm.ATermAppl name)
```
    Return the domain restrictions on the property. The results of this function is not guaranteed to be complete. Use hasDomain(ATermAppl, ATermAppl) to get complete answers.
    
    Parameters:
    
    prop -
    
    Returns:
  - getRanges
```
public Set<aterm.ATermAppl> getRanges(aterm.ATerm name)
```
    Return the domain restrictions on the property. The results of this function is not guaranteed to be complete. Use hasRange(ATermAppl, ATermAppl) to get complete answers.
    
    Parameters:
    
    prop -
    
    Returns:
  - getAllSames
```
public Set<aterm.ATermAppl> getAllSames(aterm.ATermAppl name)
```
    Return all the indviduals asserted to be equal to the given individual inluding the individual itself.
    
    Parameters:
    
    name -
    
    Returns:
  - getSames
```
public Set<aterm.ATermAppl> getSames(aterm.ATermAppl name)
```
    Return all the individuals asserted to be equal to the given individual but not the the individual itself.
    
    Parameters:
    
    name -
    
    Returns:
  - getDataPropertyValues
```
public List<aterm.ATermAppl> getDataPropertyValues(aterm.ATermAppl r,
                                                   aterm.ATermAppl x,
                                                   aterm.ATermAppl datatype)
```
    Return all literal values for a given dataproperty that belongs to the specified datatype.
    
    Parameters:
    
    r -
    
    x -
    
    lang -
    
    Returns:
    
    List of ATermAppl objects representing literals. These objects are in the form literal(value, lang, datatypeURI).
  - getDataPropertyValues
```
public List<aterm.ATermAppl> getDataPropertyValues(aterm.ATermAppl r,
                                                   aterm.ATermAppl x,
                                                   String lang)
```
    Return all literal values for a given dataproperty that has the specified language identifier.
    
    Parameters:
    
    r -
    
    x -
    
    lang -
    
    Returns:
    
    List of ATermAppl objects.
  - getDataPropertyValues
```
public List<aterm.ATermAppl> getDataPropertyValues(aterm.ATermAppl r,
                                                   aterm.ATermAppl x)
```
    Return all literal values for a given dataproperty and subject value.
    
    Parameters:
    
    r -
    
    x -
    
    Returns:
    
    List of ATermAppl objects.
  - getObjectPropertyValues
```
public List<aterm.ATermAppl> getObjectPropertyValues(aterm.ATermAppl r,
                                                     aterm.ATermAppl x)
```
    Return all property values for a given object property and subject value.
    
    Parameters:
    
    r -
    
    x -
    
    Returns:
    
    A list of ATermAppl objects
  - getPropertyValues
```
public List<aterm.ATermAppl> getPropertyValues(aterm.ATermAppl r,
                                               aterm.ATermAppl x)
```
    Return all property values for a given property and subject value.
    
    Parameters:
    
    r -
    
    x -
    
    Returns:
    
    List of ATermAppl objects.
  - getIndividualsWithProperty
```
public List<aterm.ATermAppl> getIndividualsWithProperty(aterm.ATermAppl r,
                                                        aterm.ATermAppl x)
```
    List all subjects with a given property and property value.
    
    Parameters:
    
    r -
    
    x - If property is an object property an ATermAppl object that is the URI of the individual, if the property is a data property an ATerm object that contains the literal value (See {#link #getIndividualsWithDataProperty(ATermAppl, ATermAppl)} for details)
    
    Returns:
    
    List of ATermAppl objects.
  - getIndividualsWithDataProperty
```
public List<aterm.ATermAppl> getIndividualsWithDataProperty(aterm.ATermAppl r,
                                                            aterm.ATermAppl litValue)
```
    List all subjects with the given literal value for the specified data property.
    
    Parameters:
    
    r - An ATerm object that contains the literal value in the form literal(lexicalValue, langIdentifier, datatypeURI). Should be created with ATermUtils.makeXXXLiteral() functions.
    
    x -
    
    Returns:
    
    List of ATermAppl objects.
  - getIndividualsWithObjectProperty
```
public List<aterm.ATermAppl> getIndividualsWithObjectProperty(aterm.ATermAppl r,
                                                              aterm.ATermAppl o)
```
    List all subjects with the given value for the specified object property.
    
    Parameters:
    
    r -
    
    o - An ATerm object that is the URI of an individual
    
    Returns:
    
    List of ATermAppl objects.
  - getProperties
```
public List<aterm.ATermAppl> getProperties(aterm.ATermAppl s,
                                           aterm.ATermAppl o)
```
    List all properties asserted between a subject and object.
  - getPropertyValues
```
public Map<aterm.ATermAppl,List<aterm.ATermAppl>> getPropertyValues(aterm.ATermAppl pred)
```
  - retrieve
```
public Set<aterm.ATermAppl> retrieve(aterm.ATermAppl d,
                                     Collection<aterm.ATermAppl> individuals)
```
    Return all the individuals that belong to the given class which is not necessarily a named class.
    
    Parameters:
    
    d -
    
    Returns:
  - retrieveIndividualsWithProperty
```
public List<aterm.ATermAppl> retrieveIndividualsWithProperty(aterm.ATermAppl r)
```
    Retrieve individuals which possibly have a property value for the given property.
  - tracingBasedInstanceRetrieval
```
public void tracingBasedInstanceRetrieval(aterm.ATermAppl c,
                                          List<aterm.ATermAppl> candidates,
                                          Collection<aterm.ATermAppl> results)
```
  - linearInstanceRetrieval
```
public void linearInstanceRetrieval(aterm.ATermAppl c,
                                    List<aterm.ATermAppl> candidates,
                                    Collection<aterm.ATermAppl> results)
```
  - binaryInstanceRetrieval
```
public void binaryInstanceRetrieval(aterm.ATermAppl c,
                                    List<aterm.ATermAppl> candidates,
                                    Collection<aterm.ATermAppl> results)
```
  - printClassTree
```
public void printClassTree()
```
    Print the class hierarchy on the standard output.
  - printClassTree
```
public void printClassTree(PrintWriter out)
```
  - doExplanation
```
public boolean doExplanation()
```
  - setDoExplanation
```
public void setDoExplanation(boolean doExplanation)
```
    Parameters:
    
    doExplanation - The doExplanation to set.
  - getExplanation
```
public String getExplanation()
```
  - setDoDependencyAxioms
```
public void setDoDependencyAxioms(boolean doDepAxioms)
```
    Deprecated. Use setDoExplanation instead
  - getDoDependencyAxioms
```
public boolean getDoDependencyAxioms()
```
    Deprecated. Use getExplanation instead
  - getExplanationSet
```
public Set<aterm.ATermAppl> getExplanationSet()
```
  - setRBox
```
public void setRBox(RBox rbox)
```
    Parameters:
    
    rbox - The rbox to set.
  - setTBox
```
public void setTBox(TBox tbox)
```
    Parameters:
    
    tbox - The tbox to set.
  - setTimeout
```
public void setTimeout(long timeout)
```
    Set a timeout for the main timer. Used to stop an automated test after a reasonable amount of time has passed.
    
    Parameters:
    
    timeout -
  - getRole
```
public Role getRole(aterm.ATerm term)
```
    Parameters:
    
    term -
    
    Returns:
  - getTaxonomy
```
public Taxonomy<aterm.ATermAppl> getTaxonomy()
```
    Get the classification results.
  - getTaxonomyBuilder
```
public TaxonomyBuilder getTaxonomyBuilder()
```
  - setTaxonomyBuilderProgressMonitor
```
public void setTaxonomyBuilderProgressMonitor(ProgressMonitor progressMonitor)
```
  - getRoleTaxonomy
```
public Taxonomy<aterm.ATermAppl> getRoleTaxonomy(boolean objectTaxonomy)
```
  - getRoleTaxonomy
```
public Taxonomy<aterm.ATermAppl> getRoleTaxonomy(aterm.ATermAppl r)
```
  - getSizeEstimate
```
public SizeEstimate getSizeEstimate()
```
  - addRule
```
public boolean addRule(Rule rule)
```
    Add a rule to the KB.
  - getRules
```
public Set<Rule> getRules()
```
    Return all the asserted rules.
  - getNormalizedRules
```
public Map<Rule,Rule> getNormalizedRules()
```
    Return the asserted rules with their normalized form. A normalized rule is a rule where any class expression occurring in the rules is in normalized form.
    
    Returns:
    
    set of rules where
  - canUseIncConsistency
```
protected boolean canUseIncConsistency()
```
    Check if we can use incremental consistency checking
    
    Returns:
  - ensureIncConsistency
```
public void ensureIncConsistency(boolean aboxDeletion)
```
  - getDependencyIndex
```
public DependencyIndex getDependencyIndex()
```
    Get the dependency index for syntactic assertions in this kb
    
    Returns:
  - getSyntacticAssertions
```
public Set<aterm.ATermAppl> getSyntacticAssertions()
```
    Get syntactic assertions in the kb
    
    Returns:
  - handleUndefinedEntity
```
protected static void handleUndefinedEntity(String s)
```
  - getABoxAssertions
```
public Set<aterm.ATermAppl> getABoxAssertions(KnowledgeBase.AssertionType assertionType)
```
  - getAboxMembershipAssertions
```
public Set<aterm.ATermAppl> getAboxMembershipAssertions()
```
    Deprecated. Use getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType) instead
  - getAboxObjectRoleAssertions
```
public Set<aterm.ATermAppl> getAboxObjectRoleAssertions()
```
    Deprecated. Use getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType) instead
  - getAboxDataRoleAssertions
```
public Set<aterm.ATermAppl> getAboxDataRoleAssertions()
```
    Deprecated. Use getABoxAssertions(org.mindswap.pellet.KnowledgeBase.AssertionType) instead
  - getDeletedAssertions
```
public Set<aterm.ATermAppl> getDeletedAssertions()
```
    Returns:
    
    the deletedAssertions
  - isExplainOnlyInconsistency
```
public boolean isExplainOnlyInconsistency()
```
    Returns current value of explainOnlyInconsistency option.
    
    Returns:
    
    current value of explainOnlyInconsistency option
    
    See Also:
    
    setExplainOnlyInconsistency(boolean)
  - setExplainOnlyInconsistency
```
public void setExplainOnlyInconsistency(boolean explainOnlyInconsistency)
```
    Controls what kind of explanations can be generated using this KB. With this option enabled explanations for inconsistent ontologies will be returned. But if the ontology is consistent, it will not be possible to retrieve explanations for inferences about instances. This option is disabled by default. It should be turned on if explanations are only needed for inconsistencies but not other inferences. Turning this option on improves the performance of consistency checking for consistent ontologies.
    
    Parameters:
    
    explainOnlyInconsistency - new value for explainOnlyInconsistency option

Class KnowledgeBase

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

log

abox

tbox

rbox

builder

state

timers

aboxAssertions

changes

canUseIncConsistency

Constructor Detail

KnowledgeBase

KnowledgeBase

Method Detail

getExpressivity

getExpressivityChecker

clear

clearABox

copy

copy

loadKRSS

addClass

addSubClass

addEquivalentClass

addKey

addDisjointClasses

addDisjointClasses

addDisjointClass

addComplementClass

addDataPropertyValue

addIndividual

addType

addType

addSame

addAllDifferent

addDifferent

addObjectPropertyValue

addPropertyValue

addNegatedPropertyValue

addProperty

addObjectProperty

addDatatypeProperty

addOntologyProperty

addAnnotationProperty

addAnnotation

getAnnotations

getIndividualsWithAnnotation

isAnnotation

addSubProperty

addEquivalentProperty

addDisjointProperties

addDisjointProperties

addDisjointProperty

addDisjointProperty

addInverseProperty

addTransitiveProperty

addSymmetricProperty

addAntisymmetricProperty

addAsymmetricProperty

addReflexiveProperty

addIrreflexiveProperty

addFunctionalProperty

addInverseFunctionalProperty

addDomain

addDomain

addRange

addRange

addDatatype

addDatatypeDefinition

removeDomain

removePropertyValue

removeRange

removeType